py-biopython  most recent diff

View the most recent changes for the py-biopython port at: py-biopython.darwinports.com/diff
Scroll down toward the bottom of the page to get installation instructions for py-biopython.
The raw portfile for py-biopython 1.44 is located here:
http://py-biopython.darwinports.com/dports/python/py-biopython/Portfile
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# $Id: Portfile 30473 2007-10-28 22:37:45Z mww macports.org $

PortSystem 1.0
PortGroup python24 1.0

Name: py-biopython
Version: 1.44
Category: python science
Maintainers: mww
Platform: darwin
Description: python tools for computational molecular biology
Long Description: python tools for computational molecular biology: parsers for various file formats, interfaces for programs, tools for performing common operations on sequences, etc.

Homepage: http://www.biopython.org/
master_sites ${homepage}/DIST
distname biopython-${version}
checksums sha1 ca2a35c9e92a219256fe4fc2a232df5328f9f5d9
patchfiles patch-setup.py

depends_lib-append port:py-numeric port:py-mx port:py-reportlab

build.env CFLAGS=-I${python.include}

test.run no
test.cmd ${build.cmd}
test.target test

post-destroot {
file delete -force ${destroot}${prefix}/share/doc/${name}
file copy ${worksrcpath}/Doc ${destroot}${prefix}/share/doc/${name}
xinstall -m 644 -W ${worksrcpath} CONTRIB DEPRECATED LICENSE NEWS README ${destroot}${prefix}/share/doc/${name}
}

livecheck.check regex
livecheck.url http://biopython.org/wiki/Download
livecheck.regex biopython-(\[0-9\.\]+).tar.gz

If you haven't already installed Darwin Ports, you can find easy instructions for doing so at the main Darwin Ports page.
Once Darwin Ports has been installed, in a terminal window and while online, type the following and hit return:

%  cd /opt/local/bin/portslocation/dports/py-biopython
%  sudo port install py-biopython  
Password: 

You will then be prompted for your root password, which you should enter. You may have to wait for a few minutes while the software is retrieved from the network and installed for you. Y ou should see something that looks similar to:

--->  Fetching py-biopython
--->  Verifying checksum for py-biopython
--->  Extracting py-biopython
--->  Configuring py-biopython
--->  Building py-biopython with target all

--->  Staging py-biopython into destroot

--->  Installing py-biopython

- Make sure that you do not close the terminal window while Darwin Ports is working. Once the software has been installed, you can find further information about using py-biopython with these commands:

%  man py-biopython
%  apropos py-biopython
%  which py-biopython
%  locate py-biopython

 Where to find more information: