Py-biopython version 1.49 - How to Download and Install on Mac OS X
Monday the 23rd of November, 2009

    py-biopython  most recent diff


    version 1.49

      View the most recent changes for the py-biopython port at: py-biopython.darwinports.com/diff
      Scroll down toward the bottom of the page to get installation instructions for py-biopython.
      The raw portfile for py-biopython 1.49 is located here:
      http://py-biopython.darwinports.com/dports/python/py-biopython/Portfile
      Find related portfiles with the unique DarwinPorts.com search feature.
      Check for any related Fink projects here: pdb.finkproject.org/pdb/package.php/py-biopython


      The py-biopython Portfile 57375 2009-09-10 08:16:41Z ryandesign macports.org $

      PortSystem 1.0
      PortGroup python24 1.0

      Name: py-biopython
      Version: 1.49
      Category: python science
      Maintainers: mww
      Platform: darwin
      Description: python tools for computational molecular biology
      Long Description: python tools for computational molecular biology: parsers for various file formats, interfaces for programs, tools for performing common operations on sequences, etc.

      Homepage: http://www.biopython.org/
      Master Sites: ${homepage}/DIST
      distname biopython-${version}
      Checksums: md5 d233d4944f0c17d5927ca32c5a30d5b3 sha1 f2ea7f3b8985facdf8f4d4c86ee300e4a8f1a5fb rmd160 3d6893cd788c39512a314345bb2ea441c715c17d

      depends_lib-append port:py-numpy port:py-mx port:py-reportlab

      build.env CFLAGS=-I${python.include}

      test.run no
      test.cmd ${build.cmd}
      test.target test

      post-destroot {
      file delete -force ${destroot}${prefix}/share/doc/${name}
      file copy ${worksrcpath}/Doc ${destroot}${prefix}/share/doc/${name}
      xinstall -m 644 -W ${worksrcpath} CONTRIB DEPRECATED LICENSE NEWS README ${destroot}${prefix}/share/doc/${name}
      }

      livecheck.type regex
      livecheck.url http://biopython.org/wiki/Download
      livecheck.regex biopython-(\[0-9\.\]+).tar.gz

    If you haven't already installed Darwin Ports, you can find easy instructions for doing so at the main Darwin Ports page.

    Once Darwin Ports has been installed, in a terminal window and while online, type the following and hit return:


      %  cd /opt/local/bin/portslocation/dports/py-biopython
      % sudo port install py-biopython
      Password:
    You will then be prompted for your root password, which you should enter. You may have to wait for a few minutes while the software is retrieved from the network and installed for you. Y ou should see something that looks similar to:

      ---> Fetching py-biopython
      ---> Verifying checksum for py-biopython
      ---> Extracting py-biopython
      ---> Configuring py-biopython
      ---> Building py-biopython with target all
      ---> Staging py-biopython into destroot
      ---> Installing py-biopython
    - Make sure that you do not close the terminal window while Darwin Ports is working. Once the software has been installed, you can find further information about using py-biopython with these commands:
      %  man py-biopython
      % apropos py-biopython
      % which py-biopython
      % locate py-biopython

     Where to find more information:

    Darwin Ports



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